Publications

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Filters: Author is Bafna, Vineet  [Clear All Filters]
Magazine Article
Bafna V, Deutsch A, Heiberg A, Kozanitis C, Ohno-Machado L, Varghese G. Abstractions for Genomics: Or, which way to the Genomic Information Age?. Communications of the ACM. 2013.
Journal Article
Lo C, Bashir A, Bansal V, Bafna V. Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011;12 Suppl 1:S24.
Kinsella M, Harismendy O, Nakano M, Frazer KA, Bafna V. Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinformatics. 2011;27(8):1068-75.
Kim S, Medvedev P, Paton TA, Bafna V. Reprever: resolving low-copy duplicated sequences using template driven assembly. Nucleic Acids Res. 2013.
Brinza D, Schultz M, Tesler G, Bafna V. RAPID detection of gene-gene interactions in genome-wide association studies. Bioinformatics. 2010;26(22):2856-62.
Ohno-Machado L, Bafna V, Boxwala AA, Chapman BE, Chapman WW, Chaudhuri K, Day ME, Farcas C, Heintzman ND, Jiang X. iDASH: integrating data for analysis, anonymization, and sharing. J Am Med Inform Assoc. 2011.
Kozanitis C, Saunders C, Kruglyak S, Bafna V, Varghese G. Compressing genomic sequence fragments using SlimGene. J Comput Biol. 2011;18(3):401-13.
Zakov S, Kinsella M, Bafna V. An algorithmic approach for breakage-fusion-bridge detection in tumor genomes. Proc Natl Acad Sci U S A. 2013;110(14):5546-51.