Abstractions for Genomics: Or, which way to the Genomic Information Age?. Communications of the ACM. 2013..
An algorithmic approach for breakage-fusion-bridge detection in tumor genomes. Proc Natl Acad Sci U S A. 2013;110(14):5546-51..
Classic Broken Cell and Newer Live Cell Methods for Cell Cycle Assessment. Am J Physiol Cell Physiol. 2013..
Comparison of four prediction models to discriminate benign from malignant vertebral compression fractures according to MRI feature analysis. AJR Am J Roentgenol. 2013;200(3):493-502..
Detecting Inappropriate Access to Electronic Health Records Using Collaborative Filtering. Machine Learning for Science and Society. 2013..
Differential expression of miR-145 in children with Kawasaki disease. PLoS One. 2013;8(3):e58159..
EXpectation Propagation based LOgistic REgRession (EXPLORER): Distributed Privacy Preserving Online Model Learning. Journal of Biomedical Informatics. 2013..
REPREVER: Resolving low-copy duplicated sequences using template driven assembly. Nucleic Acids Research. 2013..
Setting up an intronic miRNA database. Methods Mol Biol. 2013;936:69-76..
Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. J Am Med Inform Assoc. 2013;20(1):1..
Using Genome Query Language (GQL) to uncover genetic variation. Bioinformatics. 2013..
Adaptive Distributed Video Coding with Correlation Estimation using Expectation Propagation. SPIE Optics + Photonics. 2012..
Analysis of high-throughput screening assays using cluster enrichment. Stat Med. 2012;31(30):4175-89..
Classification accuracies of physical activities using smartphone motion sensors. J Med Internet Res. 2012;14(5):e130..
A collaborative framework for Distributed Privacy-Preserving Support Vector Machine learning. AMIA Annu Symp Proc. 2012;2012:1350-9..
Consistency of nearest neighbor classification under selective sampling. 25th Annual Conference on Learning Theory. 2012..
Convergence Rates for Differentially Private Statistical Estimation. 29th International Conference on Machine Learning. 2012..
Crosstalk Between the Renin-Angiotensin System and the Advance Glycation End Product Axis in the Heart: Role of the Cardiac Fibroblast. J Cardiovasc Transl Res. 2012..
Demographic Identification:Variable Extraction Resource (DIVER). 2nd IEEE Conference on Healthcare informatics, Imaging, and Systems Biology. 2012..
Diﬀerentially Private Projected Histograms: Construction and Use for Prediction. European Conference on Machine Learning . 2012..
Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): An Algorithm for Joint Optimization of Discrimination and Calibration. PLoS One. 2012;7(11):e48823..
Exact statistical tests for the intersection of independent lists of genes. Ann Appl Stat. 2012;6(2):521-541..
Genetics insights into the pathogenesis of Kawasaki disease. Circ Cardiovasc Genet. 2012;5(3):277-8..
Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. J Am Med Inform Assoc. 2012..
A Hybrid System for Temporal Relation Determination in Medical Discharge Summaries. Sixth i2b2 Shared Task and Workshop. 2012..
I-spline Smoothing for Calibrating Predictive Models. AMIA Summits Transl Sci Proc. 2012;2012:39-46..
Methods for Delivering Physical Activity Messages. In: Behavioral Aspects of Exercise. Behavioral Aspects of Exercise. ; 2012. p. ..
Near-Optimal Algorithms for Differentially-Private Principal Components. Neural Information Processing Systems (NIPS). 2012..
Ontological approach for the management of informed consent permissions. 2nd IEEE Conference on Healthcare informatics, Imaging, and Systems Biology. 2012..
A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. J Am Med Inform Assoc. 2012;19(e1):e137-e144..
Policy Driven Development: Flexible Policy Insertion for Large Scale Systems. IEEE International Symposium on Policies for Distributed Systems and Networks. 2012..
Predicting accurate probabilities with a ranking loss. 29th International Conference on Machine Learning. 2012..
Preserving Institutional Privacy in Distributed binary Logistic Regression. AMIA Annu Symp Proc. 2012;2012:1450-8..
Privacy-preserving heterogeneous health data sharing. J Am Med Inform Assoc. 2012..
Protecting count queries in study design. J Am Med Inform Assoc. 2012..
A Randomized Response Model For Privacy Preserving Smart Metering. IEEE Trans Smart Grid. 2012;3(2):1317-1324..
Reviewing social media use by clinicians. J Am Med Inform Assoc. 2012;19(5):777-81..
Selecting cases for whom additional tests can improve prognostication. AMIA Annu Symp Proc. 2012;2012:1260-8..
A semi-automated quantification of pulmonary artery dimensions in computed tomography angiography images. AMIA Annu Symp Proc. 2012;2012:36-42..
Semi-supervised object recognition using structure kernel. International Conference on Image Processing (ICIP) IEEE . 2012..
Shape-oriented graph cuts and graph matching feedback for silhouette tracking. Visual Communications and Image Processing . 2012..
SHARE: system design and case studies for statistical health information release. J Am Med Inform Assoc. 2012..
SPLOOCE: A new portal for the analysis of human splicing variants. RNA Biol. 2012;9(11):1339-43..
Statistical Evaluation of Diagnostic Performance: Topics in Roc Analysis. In: Boca Raton; 2012. p. 223..
Statistical Tests for the Intersection of Independent Lists of Genes: Sensitivity, FDR, and Type I Error Control. The Annals of Applied Statistics. 2012;6(2):521-541..
To share or not to share: that is not the question. Sci Transl Med. 2012;4(165):165cm15..
Anomaly and Signature Filtering Improve Classifier Performance For Detection Of Suspicious Access To EHRs. AMIA Annu Symp Proc. 2011;2011:723-31..
AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. BMC Bioinformatics. 2011;12:75..
An approach to improve LOINC mapping through augmentation of local test names. J Biomed Inform. 2011..
Calibrating predictive model estimates to support personalized medicine. J Am Med Inform Assoc. 2011..
Compressing genomic sequence fragments using SlimGene. J Comput Biol. 2011;18(3):401-13..
Differentially Private Empirical Risk Minimization. J Mach Learn Res. 2011;12:1069-1109..
Empirical comparison of cross-platform normalization methods for gene expression data. BMC Bioinformatics. 2011;12:467..
iDASH: integrating data for analysis, anonymization, and sharing. J Am Med Inform Assoc. 2011..
Improving predictions in imbalanced data using pairwise expanded logistic regression. AMIA Annu Symp Proc. 2011;2011:625-34..
Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells. BMC Res Notes. 2011;4:381..
Natural language processing: an introduction. J Am Med Inform Assoc. 2011;18(5):544-51..
Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J Am Med Inform Assoc. 2011;18(5):540-3..
Quantifying Fine-Grained Privacy Risk and Representativeness in Medical Data. 17th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. 2011..
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinformatics. 2011;27(8):1068-75..
Smooth isotonic regression: a new method to calibrate predictive models. AMIA Joint Summit on Translational Science. 2011;2011:16-20..
Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011;12 Suppl 1:S24..
Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. Circ Cardiovasc Genet. 2011;4(1):16-25..
Translational bioinformatics: linking knowledge across biological and clinical realms. J Am Med Inform Assoc. 2011;18(4):354-7..
Trends in biomedical informatics: most cited topics from recent years. J Am Med Inform Assoc. 2011;18 Suppl 1:i166-70..
Using statistical and machine learning to help institutions detect suspicious access to electronic health records. J Am Med Inform Assoc. 2011;18(4):498-505..
DSGeo: software tools for cross-platform analysis of gene expression data in GEO. J Biomed Inform. 2010;43(5):709-15..
A potential role for intragenic miRNAs on their hosts' interactome. BMC Genomics. 2010;11:533..
RAPID detection of gene-gene interactions in genome-wide association studies. Bioinformatics. 2010;26(22):2856-62..
Sample Complexity Bounds for Differentially Private Learning. 24th Annual Conference on Learning Theory. 2010..